Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015816265.1_cds_XP_016498723.1_12718
CDS Infomation

[gene=LOC107817412] [db_xref=GeneID:107817412] [protein=polyadenylation and cleavage factor homolog 4-like isoform X2] [protein_id=XP_016498723.1] [location=complement(join(117128..119014,119674..120078,120182..120298,121056..121310,121649..121750,122604..122657))] [gbkey=CDS]
Sequence

ATGTTAGATAAATTGATCTTGAGCCTTGGCTTTTGCGATAAGCAGACATCAGAGGTTCCT
ACTGAGCAAAAGCTGCCATCTCTATACCTTTTGGACAGTATTGTGAAGAACATTGGGCGG
GATTATATTAAGTATTTTGCCGGCAAGCTACCCGAGGTTTTCTGCAAAGCTTATAGACAG
GTTGAACCTTCGGTACATCCTGGGATGCGGCATCTTTTTGGAACTTGGAAAGGAGTATTT
CCTGCTCAACAACTCCAATTAATTGAGAAGGAGCTCGGATTTACAACTGGTGTCAATGGC
TCTTCATCAGGGACATCTAGGCCTGATCCCCAGGCTCAACGACCTGCACATAGCATTCAT
GTAAATCCCAAATATCTGGAGGCAAGGCAACGCCTACAGCAATCAACCAGGACAAAAGGA
GCAGTTAGTGACATCAGCAGCACTCTTAATGTAAACGAGAACGTAGAGAGACCGGAGATA
ACAACCAGTGTTAGCTCTGGAAGATCATGGATTGATCCTTCTGTTAAGCGTGCTCAGAAA
GAAAAGTTGAACGAGCATGTTCCTGAGAAGAGTATCACTGCAGCATATGGAGATTCGGAT
TATGGTTCTGATCTGTCCAGGCGTTCTGCCTTTGGAGTAGGAAGAGGAGGTGAGAGATTT
AAGGAACAGGGGTTCGATAAACCTTGGTATGATTCTGGGACTGGTAAAATATTGAGCCAA
AGAAGCGGCTTGGACATTAAGCATGGGTTCCAAAGTATATCCCAAAAATCTGCAACCTCT
GATGCACATCCACAACTGATACAGTCCTTGCCAAATAGAACCAGTACTTTGACTGATAGG
AGCTGGAAGAATTCTGAGGAAGAGGAGTACATGTGGGATGATGTAAACAGTGCAGCTAAA
GACCGGTGGGCATCTGAGGATTCAGATAAATCTGACCTAGAAAATCAACTGAGGAGACCA
CAAAGCATAAGGGAGGTCGTATTAAGGGCTGATAGTGAAGCCTCAGCTGATTCTCTTTCA
GGCGACGAGCGAGGCCAAACGTCTTTTGGGAATCAAAATTCAGCAATGTGGTCGAGGGAT
TCACATGCTTTAGATGGAGCTAGGCATTCATCTTCTCTTCGAAGTGCTCCAGTTCATCCA
GAAGGCTATCAAACTTCTTTCAGTTCGTTGTCAAAAGCTGCAAATTCAATAGGTAGGACA
TCTTTCAAGTCACAGACAGGTTCAGTCCATGTTGGAGCGCCAAATTTTGTGCCAATGAAT
GCAACTTTAGAGTCCAGGGGATCCATAGTGCAACAGCGAGAAACTCTCAGAGCTGCCTCT
CCCTCTGCTCACTCGCCAATGCATCAGCATCCTCCATCCCCATCAGTCATAACAAGCAAC
ACTAATCAAATAGTTAACAGTCTCGGTGAGCAGTACCAGCCGCAGACCACTTCTCGTTCT
GATCCAAGAATATCCCAATTCTCAAGGAGGTCAAATCTTGATCCTCGTAACCAGTTTTCC
CAGGAATCTCTGGCAATGCCATCTCGGAATGCTGTTTCAGTTAATTCACAAAGACAACAG
CCTCCAAATTTGCAGAGTGCTTCTACCTTGGCCTCCTCTCTTCAGTTGAGGCATGATGTT
CAGCAGGAAAGCCTGGAATCTGAATATTCTGGTCAAACCCAGAATTCAGCAGTTCCTCAG
ATTTCAGGTTTTCCTAATCCCTCTAGCACTAGCAGTTTGTTGGCTGCTGTTTTGAAGAGT
GGAATTATTGGTAGTAAATCAAGTTCAGGTACAACACCGAGTTCTCTTGATAAGGGTGCT
CTGTCATCCCAAGCCAGTGCACAGCCTCCTTTACCAAGTGGTCTTCCTCCCGCCCAGTTT
TCCCCAGCTGGGCCCAGGATTCCACCGGCCTCTATCTCTAGTCTGTCGTTGGACAAAAAT
GCTTCAAGCACTCCAAATTATAACTCCCAGAGAAATGTAGAACAGCCACCATTGCCATCT
GGGCCACCTCCAACTCTTGTAGAGAGTGCATCACTGCAGCCTTTGAATGCACCAAATACT
GCTTCTAATCCCCTGTCAAGCATTTTGAGTACGTTGGTAGCGAAGGGGTTGATATCTGCA
TCAAAGAAGGAGTCCCCTACTTATACTCCTTCGGATACACCCCCTCAAACGCAGAACCAT
ATTCCACCAGCAAGCTCCATGTCAACTCCTGCTTTATCTGCTCCAATATCCTCATCCATT
CCTTTCTTGGCTCCGAAGGCCGAGATTTCTCTCTCAAAACCTGCTGCTAAAACCCCTGAT
GCCTTACTTCGGTCCACCAAAGAAGAGGCAAAAAGTCTCATTGGGCTTGCGTTTAAGCCA
GATGTGATTCGGAAGTCCCATCCTGATGTGATCGGTGAACTTCTTGATGACGTTCCACAT
CAGTGTGGCATATGCGGTTTTGGACTTAAACTCCAAGAGAAACTGGATAGACACTTGGAG
TGGCACGCATTGAGAAATCCAGATGTCAAACTGTTGAATAATTCAAGAAAGTGGTATTTA
AATTCTGGAGAATGGATTGCTGGATTTGGTTGCCTCCCTTGTGATAAATCCAAAGGGACA
ACCGGAGGTTCTAATGAAACATCAGAATGTACCGAGGCCATGGTTCCTGCAGATGAAAGT
CAATGTGTATGTGTTTTGTGTGGTGAGCTTTTTGAAGACTTCTACAATGAAGAAAGTGAC
AAATGGATGTTCAAAGGTGCTGTTTACATGAGTATTCCAGGTGAAGGTGGTATTCAGGGT
CCGATAGTCCACAAGAACTGTATTTCAGAAAGTTCTTGTCAAGAGTTGGGACTTGCCTAG

Peptide Sequence

PEP ID

XP_016498723.1
PEP Infomation

PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform X2 [Nicotiana tabacum]
Sequence

MLDKLILSLGFCDKQTSEVPTEQKLPSLYLLDSIVKNIGRDYIKYFAGKLPEVFCKAYRQ
VEPSVHPGMRHLFGTWKGVFPAQQLQLIEKELGFTTGVNGSSSGTSRPDPQAQRPAHSIH
VNPKYLEARQRLQQSTRTKGAVSDISSTLNVNENVERPEITTSVSSGRSWIDPSVKRAQK
EKLNEHVPEKSITAAYGDSDYGSDLSRRSAFGVGRGGERFKEQGFDKPWYDSGTGKILSQ
RSGLDIKHGFQSISQKSATSDAHPQLIQSLPNRTSTLTDRSWKNSEEEEYMWDDVNSAAK
DRWASEDSDKSDLENQLRRPQSIREVVLRADSEASADSLSGDERGQTSFGNQNSAMWSRD
SHALDGARHSSSLRSAPVHPEGYQTSFSSLSKAANSIGRTSFKSQTGSVHVGAPNFVPMN
ATLESRGSIVQQRETLRAASPSAHSPMHQHPPSPSVITSNTNQIVNSLGEQYQPQTTSRS
DPRISQFSRRSNLDPRNQFSQESLAMPSRNAVSVNSQRQQPPNLQSASTLASSLQLRHDV
QQESLESEYSGQTQNSAVPQISGFPNPSSTSSLLAAVLKSGIIGSKSSSGTTPSSLDKGA
LSSQASAQPPLPSGLPPAQFSPAGPRIPPASISSLSLDKNASSTPNYNSQRNVEQPPLPS
GPPPTLVESASLQPLNAPNTASNPLSSILSTLVAKGLISASKKESPTYTPSDTPPQTQNH
IPPASSMSTPALSAPISSSIPFLAPKAEISLSKPAAKTPDALLRSTKEEAKSLIGLAFKP
DVIRKSHPDVIGELLDDVPHQCGICGFGLKLQEKLDRHLEWHALRNPDVKLLNNSRKWYL
NSGEWIAGFGCLPCDKSKGTTGGSNETSECTEAMVPADESQCVCVLCGELFEDFYNEESD
KWMFKGAVYMSIPGEGGIQGPIVHKNCISESSCQELGLA

Transcript Sequence

Gene sequence data has not been registered.